[{"data":1,"prerenderedAt":-1},["ShallowReactive",2],{"item-2308":3},{"id":4,"title":5,"url":6,"summary":7,"summary_zh":8,"content":9,"source_name":10,"source_url":6,"published_at":11,"category":12,"cover_url":9,"hotness":13,"is_selected":14,"score":15,"score_detail":16,"sources":24,"tags":26,"view_count":32,"doi":33,"paper":34,"created_at":51},2308,"Coffee phytobiome dynamics: integrating multitrophic interactions and plant physiology for climate-resilient production","https:\u002F\u002Fdoi.org\u002F10.3389\u002Ffmicb.2026.1951767","Coffee ( Coffea arabica L. and Coffea canephora Pierre ex A. Froehner) is a globally important perennial plantation crop that sustains the livelihoods of millions of smallholder farmers while making substantial contributions to agricultural economies worldwide global agricultural economies. Nevertheless, sustainable coffee production is increasingly constrained by climate change, declining soil fertility, emerging pests and diseases and the environmental costs associated with intensive use of synthetic agrochemicals. Recent advances in plant microbiome research have transformed the understanding of coffee from an individual organism to a holobiont, where the host plant and its associated microorganisms operate as an integrated biological system. The coffee phytobiome encompasses diverse microbial communities inhabiting the rhizosphere, rhizoplane, endosphere, phyllosphere, anthosphere, carposphere and spermosphere, together with complex multitrophic interactions involving shade trees, soil fauna, insects and the surrounding environment. These interactions collectively regulate nutrient acquisition, carbon assimilation, water-use efficiency, hormonal balance, stress tolerance, immune responses and overall plant productivity. This review critically examines current advances in multitrophic plant–microbe interactions that influence physiological adaptation in coffee, with particular emphasis on sustainable production under Indian agroecological conditions. It highlights the functional functions of plant growth-promoting rhizobacteria (PGPR) and arbuscular mycorrhizal fungi (AMF), endophytic microorganisms and other beneficial microbes in enhancing root development, nutrient cycling, and resilience to biotic and abiotic stresses. Furthermore, the review evaluates recent progress in metagenomics, metatranscriptomics, metabolomics and microbiome engineering for harnessing indigenous microbial resources. Finally, it outlines future research priorities integrating plant physiology, microbial ecology, systems biology, and precision agriculture to develop climate-resilient, resource-efficient, and environmentally sustainable coffee production systems.","咖啡（Coffea arabica L. 和 Coffea canephora Pierre ex A. Froehner）是全球重要的多年生种植作物，维系着数百万小农户的生计，同时为全球农业经济作出重大贡献。然而，可持续咖啡生产日益受到气候变化、土壤肥力下降、新发病虫害以及集约化使用合成农用化学品所带来的环境成本的制约。近年来植物微生物组研究的进展已将人们对咖啡的认知从单一生物体转变为全息生物（holobiont），即宿主植物与其相关微生物作为一个整合的生物系统协同运作。咖啡植物微生物组（phytobiome）涵盖栖息于根际、根表、内生圈、叶际、花际、果际和种际的多样化微生物群落，以及涉及遮荫树、土壤动物、昆虫和周围环境的复杂多营养级相互作用。这些相互作用共同调控养分获取、碳同化、水分利用效率、激素平衡、胁迫耐受性、免疫应答和整体植物生产力。本文综述批判性地审视了影响咖啡生理适应的多营养级植物–微生物相互作用的最新进展，特别关注印度农业生态条件下的可持续生产。文章重点阐述了植物促生根际细菌（PGPR）和丛枝菌根真菌（AMF）、内生微生物及其他有益微生物在促进根系发育、养分循环以及增强生物和非生物胁迫韧性方面的功能。此外，本文评估了宏基因组学、宏转录组学、代谢组学和微生物组工程在利用本土微生物资源方面的最新进展。最后，文章展望了未来研究重点，即整合植物生理学、微生物生态学、系统生物学和精准农业，以开发气候韧性、资源高效和环境可持续的咖啡生产系统。",null,"Frontiers in Microbiology","2026-09-10T00:00:00Z","论文",10,false,77,{"impact":17,"substance":18,"depth":19,"authority":20,"freshness":21,"relevant":22,"comment":23},18,20,17,14,8,1,"系统综述咖啡植物微生物组与多营养级互作，为气候韧性生产提供微生物组工程与组学新思路，专业性强但属细分作物领域，产业影响中等。",[25],{"name":10,"url":6},[27,28,29,30,31],"智慧农业","气候韧性","土壤健康","咖啡产业","植物微生物组",0,"10.3389\u002Ffmicb.2026.1951767",{"doi":33,"openalex_id":35,"authors":36,"venue":10,"cited_by_count":32,"oa_url":42,"card":43,"direction":49,"ingested_from":50},"W7212145113",[37,40],{"name":38,"orcid":39},"Somashekhargouda Patil","https:\u002F\u002Forcid.org\u002F0000-0002-0362-0745",{"name":41,"orcid":9},"C. S. Rudragouda","https:\u002F\u002Fwww.frontiersin.org\u002Fjournals\u002Fmicrobiology\u002Farticles\u002F10.3389\u002Ffmicb.2026.1951767\u002Fpdf",{"tldr":44,"method":45,"finding":46,"direction":47,"opportunity":48},"综述咖啡植物微生物组与多营养级互作，提出整合植物生理与微生物组提升气候韧性生产。","综述微生物组学、多组学与微生物组工程，聚焦印度咖啡农生态。","咖啡作为全生物体，其根际、内生等微生物组通过多营养级互作调控养分、抗逆与生产力。","农业绿色发展与碳","可探索咖啡全生物体多组学数据整合与微生物组工程，构建气候韧性精准调控模型。","智慧农业 \u002F 农业物联网","openalex","2026-09-13T23:30:11.231069Z"]